If you opened your external hard drive and your files were suddenly nowhere to be found, there are several reasons that might have happened. The good news is that most of them are often fixable. Below, we’ll walk through different methods that can help you figure out what went wrong and give you the best chance to recover files that disappeared from an external hard drive.

Why Files Disappear From External Hard Drives

Before jumping to the recovery techniques, here’s a brief overview of what causes file disappearance in the first place:

Reasons Description Solution
Files and folders are hidden If you are certain that the files are present on your PC but can’t access them, chances are that the files and folders are hidden. Unhide Missing Files & Folders by using Windows’ built-in features.
Accidental deletion or formatting Human errors like accidentally deleting or formatting your external hard drive. Use data recovery software to recover data from the external hard drive.
Viruses or malware infection Viruses and dangerous malware like trojans can result in abrupt file deletion and disappearance. Scan and disinfect your external hard drive, then attempt data recovery first, then try to recover hidden files from the external hard disk storage if the malware changed file attributes, hid folders, or made the data appear missing.
A damaged boot sector A damaged boot sector on NTFS drives can prevent Windows from reading the file system properly and make files seem missing. Fix the external hard drive errors using CHKDSK (in some cases, it may be able to repair an NTFS boot sector by using the backup copy).
Physical damage Mechanical damage arising from physical blunt force, hard disk head platter damage, moisture, power outages, etc. If you are dealing with significant physical damage and your PC doesn’t detect the external hard drive, consult a data recovery service center.

How to Recover Files That Disappeared From an External Hard Drive

As promised, here are the various techniques that you can use to recover files that disappeared from an external hard drive:

Method 1: Retrieve Missing Files Using a Data Recovery Tool

Data recovery software provides a simple and efficient way to reclaim missing or deleted items. In specific cases, such tools remain the only viable option for getting back what you’ve lost, especially after actions like unintended disk formatting or irreversible file removal (Shift + Delete). 

Here’s how you can use Disk Drill to retrieve files missing from the external hard drive:

  1. Download, install, and launch Disk Drill on your PC.
    Disk Drill
    Data recovery for free
    Your Companion for Deleted Files Recovery
  2. Connect the affected hard drive to your PC. Select the external hard drive from the list of devices, and click Search for lost data. selecting drive on disk drill
  3. If the app asks which scan type to use, choose Universal Scan, since it gives you the most complete search and is usually the best starting point for missing files.Choose Universal Scan
  4. Click on Review found items once the scan terminates.
    scan window on disk drill
  5. Refine your scan results by using the broad filters on the left pane or searching for a particular file type. For instance, you can shortlist the scan results to display only jpg files.
  6. Alternatively, you could filter based on the file status: Deleted or lost, Existing or Reconstructed.
    existing files on disk drill
  7. Leverage the preview feature to get a sneak peek of your data before retrieving files missing from the external hard drive.
    preview feature on disk dirll
  8. The next step to recover files disappeared from your external hard drive is to select the files and folders you want to retrieve and click Recover.
    selecting files for data recovery
  9. Specify the destination to save recovered files that disappeared from the external hard drive, and click Next.
    selecting destination for data recoveryDisk Drill will show all available locations except the same external drive you’re recovering from. That’s intentional, since saving recovered files back to the same drive can overwrite other missing data and lower your chances of recovering more files.
  10. Click on Show recovered data in Explorer to view the files that disappeared from your external hard drive.

If everything looks good, you can copy the recovered files back to your external drive, as long as the drive itself does not show signs of trouble. You can check that in Disk Drill too. It includes a built-in S.M.A.R.T. Monitoring module that can warn you about drive health issues, such as bad sectors, read errors, or any other signs the drive may be starting to fail.

Method 2: Unhide Missing Files & Folders

There’s a possibility you accidentally marked certain files & folders as hidden. Additionally, some file-hiding viruses like Trojans manipulate the “hidden” attribute to restrict file access.

In such cases, try these techniques to unhide and restore folders disappeared from the external hard drive:

Using File Explorer

Here’s how you can use Windows File Explorer to unhide your files:

  1. Use the shortcut Windows key + E to open up File Explorer.
  2. Click on your hard disk > View > Show > Hidden Items.Hidden Items
  3. Alternatively, you can click on the three dots > Options > View > Show hidden files, folders, or drives > Apply > Ok.
    unhiding files on file explorer

Using Attrib Command

The Attrib command allows you to change the file attributes of a storage device. As a result, you can unhide missing files and folders. 

Use this command if the previous method showed hidden items and you want to turn them into normal visible files. But if your files did not appear there at all, this command will not bring them back, so you’ll need a different method.

  1. Load an elevated Command Prompt (CMD with administrative privileges) window. Here’s a shortcut: Press Windows key + R to open Run. Type in CMD, and then press CTRL + SHIFT + ENTER.
  2. Key in this command: attrib -h -r -s /s /d F:*.* and then hit Enter.
    cmd command

Using Registry Editor

Windows Registry Editor (regedit) is a database editor that allows you to manipulate critical configuration settings. With Regedit, you can view and customize attributes like startup options, hardware information, boot-up parameters, etc.

Here’s how you can flip the switch to unhide your files:

  1. Press Windows key + R to open a Run window. Type in regedit, and hit Enter.run window
  2. Navigate to this path: “HKEY_CURRENT_USER –> Software –> Microsoft –> Windows –> CurrentVersion –> Explorer –> Advanced
    registry editor
  3. Right-click on the “Hidden” attribute > Modify > change its value from “2” to “1” for unhiding your files and folders. Then, click on Ok.
    editing registry values
  4. Finally, overwrite the value for “ShowSuperHidden” to “1” to display protection OS files.

Method 3: Fix the External Hard Drive Errors Using CHKDSK

Another built-in utility that might help if a file or folder disappeared from an external hard drive is CHKDSK. Sometimes the problem is not actual deletion, but file system damage. Directory entries can get corrupted, cluster chains can be lost, bad sectors can appear on the drive, all of which can make files seem missing even though some of the data is still there. Windows includes CHKDSK to scan the drive for logical errors and, in some cases, repair them.

Here’s how you can use CHKDSK:

  1. Load an elevated Command Prompt (CMD with administrative privileges) window. Here’s a shortcut: Press Windows key + R to open Run. Type in CMD, and then press CTRL + SHIFT + ENTER.
  2. Key in this command: chkdsk F: /f /r /x and hit Enter.
    chkdsk command
  3. Replace F with the corresponding drive letter of your external hard drive. Press Enter.

Method 4: Scan Your External Hard Drive for Viruses and Malware

Viruses and malware are notorious suspects of abrupt file disappearance from an external hard drive. An infamous malware strain that hides files is IndoVirus. We highly recommend using an antivirus with real-time threat protection. 

To scan your external drive for malware, you can use the built-in Microsoft Defender that comes with Windows or a third-party antivirus app you trust. We’ll use Avast for this demo.

Here’s how to scan the drive with an antivirus app:

  1. Connect the affected external hard drive to your PC.
  2. Open File Explorer and go to This PC.
  3. Right-click your external drive and select Scan selected items for viruses.Scan selected items for viruses
  4. Wait for the scan to finish and review the results.Wait for the scan to finish

If the app finds a threat, follow the recommended steps to quarantine or remove it. After that, check the drive again to see whether your files reappear. If they do not show up, your next step should be data recovery software, since the malware may have deleted those files.

Method 5: Contact Data Recovery Service

And of course, there’s always the option to contact a professional data recovery service. If DIY recovery is not on the table, or this is a work drive and you don’t want to be held responsible if something goes wrong, handing it over to specialists may be the safer call.

Professionals at data recovery service centers possess the know-how and technology, including sophisticated tools and clean rooms, to safely retrieve data from your external hard drive.

Here are some tips to effectively shortlist a data recovery center:

  • 📃 Service range and expertise
  • 🔍 Research for online reviews
  • 📕 Read through customer service policies
  • ✅ Look for industry certifications
  • 🔒 Evaluate security policies

FAQ

Conclusion

Files disappearing from an external hard drive is often a fixable problem. In a lot of cases, the data is still there, but Windows cannot show it properly because the files are hidden, the file system has errors, malware changed something, or the files were deleted (or the drive was formatted). Since the cause can differ, the fix can differ too.

Here’s a list of checks and methods you can try:

  • Check whether the files are simply hidden in File Explorer.
  • Use data recovery software if the files still do not appear.
  • Use CHKDSK with care if file system errors are the issue.
  • Scan the drive for malware or viruses.
  • Contact a professional recovery service if the drive has physical damage or the data is too important to risk.

The main takeaway is simple: stop using the drive as soon as you notice the problem, start with the simplest methods first, and try data recovery before repair when the files matter.

Joshua Solomon author at Cleverfiles blog
Joshua Solomon

Technology, SaaS, and digital marketing are Joshua's go-to niches. He understands the need for simple and easy-to-read articles on the internet. As technologies grow in complexity, guides and how-to pieces must remain com...

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Approved by
Brett Johnson

This article has been approved by Brett Johnson, Data Recovery Engineer at ACE Data Recovery. Brett has a Bachelor's Degree in Computer Systems and Network, 12 years of experience.